Skip to content

Welcome to GWASStudio documentation

GWASStudio is a powerful CLI tool designed for efficient storage, retrieval, and querying of genomic summary statistics. It offers a high-performance infrastructure for handling and analyzing large-scale GWAS and QTL datasets, enabling seamless cross-dataset exploration.

Commands

  • export - Export summary statistics from the DB with various filtering options.
  • info - Show GWASStudio details
  • ingest - Ingest datasets into the DB.
  • list - List every category → project → study hierarchy stored in the metadata DB.
  • meta-query - Query the DB for specific records.

Installation

Set up the GWASStudio CLI on your system.

Getting Started

This short overview of GWASStudio will help you get started.

Examples

Showcase GWASStudio's common workflows by using examples.

Projects

Overview of GWASStudio projects.