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Welcome to GWASStudio documentation

GWASStudio is a powerful CLI tool designed for efficient storage, retrieval, and querying of genomic summary statistics. It offers a high-performance infrastructure for handling and analyzing large-scale GWAS and QTL datasets, enabling seamless cross-dataset exploration.

Commands

  • export - Export summary statistics from the DB with various filtering options.
  • info - Show GWASStudio details
  • ingest - Ingest datasets into the DB.
  • list - List every category → project → study hierarchy stored in the metadata DB.
  • meta-query - Query the DB for specific records.

Getting Started

This short overview of GWASStudio will help you get started.

Query Format

Detailed reference for GWASStudio's YAML query format. It covers metadata fields, filtering options, export templates, and how queries map to MongoDB operations. The reference also contains a focused introduction to the YAML format.

Examples

Showcase GWASStudio's common workflows by using examples.

Projects

Overview of GWASStudio projects.

Installation

If you are interested in developing GWASStudio, here's how to set up the CLI on your system.